Scaffold Ga0315276_10111684

Overview

Basic Information

• Taxon OID: 3300032177
• Scaffold ID: Ga0315276_10111684
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2795
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3566
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315276_101116843	F000957	N/A	MSNFQHLEGMRNLLAEIFEVNERISTGDIFSAKAAIASTNLKKIMNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0315276_101116844	F005588	N/A	MITTIRPNKMPTLWWLVPWAYARTLHMSANALKAYADRVDDILDIQRSLIEEQAAEIRTLKLRIRDQDDAIIRGTAITPDAHPHE
Ga0315276_101116845	F003714	N/A	MPNAHHPYTETLTFAGRVLPLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNVKRRGPYSPRA