NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307470_10075581

Scaffold Ga0307470_10075581


Overview

Basic Information
Taxon OID3300032174 Open in IMG/M
Scaffold IDGa0307470_10075581 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1837
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008908Metagenome / Metatranscriptome326Y
F050161Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0307470_100755811F008908N/ALADVKEDYRRNDIQAVMKYQAPDPAEFANPKWTREQVLQIIAGLPHTRKEFDDVMSTRGAEFDRQMREKKPTQEELANAVAESEPIYGISDRTSFQNSAVATLKAGDFDALREARRKALYNISDESLSEYLAYTQVMIRLLNRLDLYKDYRAH
Ga0307470_100755812F050161GGAGVQFLGKTCRKLLSKNLLFPWALISIAVLAAIFCVSGPVAADGDAALREAAQRFAERVAGIPGLHGTLRLEWHPDATWSEGESERWIEKIRDELERRALDLTGEAGAPVLDVFAAETPTQVVLTAKTRVSDRDEVRIIAIARALLPPAASPAAPIRLERQMIYENPDRILDAASVENGDGRGLVLLLHRNFELVALRVDARGVVKQSVSLNPANWKPSRDPRGEIRMRGTVVSVELPGKSCEFSWESPADLKCRAEKSAWRVETLLTSPCDRSDWKLLSSGSEPNTKDVLQVVPDGALRESSAAVLSEFPGPILSSNGEQDPSSALVIARNLRTGNYEIYKITLACGN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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