Scaffold Ga0307470_10023987

Overview

Basic Information

• Taxon OID: 3300032174
• Scaffold ID: Ga0307470_10023987
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2802
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065178	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307470_100239872	F065178	GAG	MRRSAYAIYAACFLFALPVNAQDQEKQPLVPRRPLYRPEKQVTPPTVTEALKGLGAITVGDIRSMSDNDLRQLTDVLKQWVDIAAIEEKRREESRKGKGSKLP
Ga0307470_100239873	F065178	GGA	MRRSAYAMYAVCFLFALPVNAQEKQPLIPDRPPLYRPDRQQNTPTVTEALKSLRAITVGDIRNMSDGDLRQLTDLLKQWIDIAAIEEKRREESRKGKGSKSP
Ga0307470_100239875	F065178	GGTGG	MRRSAYAMYAACFLFALPVDAQEKQPLVPDRPLYRPDKQQNTPTVTEALKSLRAITVGDIRNMSDSDLRQLTDLLKQWIDIAAIEEKRREERQDRKGKGSKLP