NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307470_10005940

Scaffold Ga0307470_10005940


Overview

Basic Information
Taxon OID3300032174 Open in IMG/M
Scaffold IDGa0307470_10005940 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4798
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018991Metagenome / Metatranscriptome232Y
F022025Metagenome / Metatranscriptome216Y
F071530Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0307470_100059401F071530AGGMKIVWRNPNHINSTSWLVEKTSSVEQESKLRVFYHSSRGPGALGTLFELLVNRHVPSCAA
Ga0307470_100059405F022025GGAGGMAPKTCHPADNLQAELDRLTYSAYLLTLDPGVAVSVVMAAIDESLEHITANSDLIERTIELSLQQLPKESTPGWDRESSALEAVLYGHSTAIDSPAFRSLKELSGNPILWLDSTSRIAFVLHHVLGYTIHDAAGKAQVSEKQFRTQLRNAYLQLTSVRVETEFRTNHKVGESELA
Ga0307470_100059406F018991GGAGGMAKIIEFYIPQSFRNVSKWLPPNERGKLLEFRVAVRKSA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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