Scaffold Ga0315268_12322167

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315268_12322167

Scaffold Ga0315268_12322167

Overview

Basic Information
Taxon OID	3300032173 Open in IMG/M
Scaffold ID	Ga0315268_12322167 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	550
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5106	Long. (^o)	-110.3566	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033797	Metagenome	176	Y
F067414	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_123221671	F033797	AGAAGG	MKTNITMRWDLAEEGLSVPASRTFSDYDTLDDDIYITAEELEGATQGSDPADPDDHAFWYVELKDGRSLYFIGADLDFEFIYDKIEI
Ga0315268_123221672	F067414	GAGG	MSDQTTREQIVYLRTALKNLAQSADRYIEDGSWIEHLSLDIEFAKGILKATKPKKETTQ

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