Scaffold Ga0315268_10838977

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10838977
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 921
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F022646	Metagenome	213	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_108389772	F022646	N/A	VQIAKANIIKSEKHRRFVASFPCVVCGNDIEVQCCHIRSIPKLGNVGKGVRDDFFTIPMCNQCHVLQHQIGELAFFYKFNINPVRVAMRLSTISPCDKINKGKSEGKYNGKLDYAEHYRFNKKDSLQQ
Ga0315268_108389773	F006893	AGGA	MVNLTTQNIIDSTKKILCNNKLYKDIDFFEVPHNKVCLAVIRAISKKSYNEIGKHYKKSWFSAYASVQDCQKNGLKSFTNKVI