Scaffold Ga0315268_10684227

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10684227
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1022
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F034044	Metagenome	175	Y
F085065	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_106842271	F034044	GGAG	MTQDEIILIADASGISYYGMGKDRDKFLHYLAAFANLVAEHEREACAKVCEVQGDYDWQQYADAIRARGNT
Ga0315268_106842272	F085065	AGGA	MTKQELLKLLKLLSAIESAMSIHRATLPDYLFEQIDAAVAVLEREILK
Ga0315268_106842274	F011669	GGA	MNDNEDYELANWMHLIATCILGLFALVGVAGLAGFLWGML
Ga0315268_106842275	F004450	N/A	MNWVAAGLIALVMSAAYLLDGPSEHDARVDTAEEKIQKLCGENAAWKLLDDGSIQCYTHRGFKTRKVTL