NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10308192

Scaffold Ga0315268_10308192


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10308192 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1534
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016125Metagenome249N
F023831Metagenome / Metatranscriptome208N
F100667Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315268_103081921F016125N/AGCTAVLRGRGAVASREPTRAARAVLFYRRDIGMAAVRDFDPTQINSDFSAILEQAGVAFTYQGVSVTGIWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPKVTQTLSRASITYFIERVTLDAEGAGCEISVAKVI
Ga0315268_103081922F100667AGGMISIFSDTKKLEFALARLADAAKVDLGLVVKQEAAYVAKAIMQITPPTGDKTKKGATVATVTGGEITKTKASGLSTNAKEQGENAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGRHETMGVSLGNEGGKKIRIYRKFWQGAASIETMKAFHFANRTERGRRRQVTRSLVGRWAVQDQMWVSEEAANAYLKHTQKKVGLAKAGFAAAAMACGVRVPSWIRRHMAKAGNAQVHFGANPFVVARTTGNQIPDLQRVVDGALKIRYKITISKYRAILANRAVNLGFTRVVGGMPIKSDA
Ga0315268_103081923F023831N/AMSTRTNIRTATANALTSALVVPTANILRGRNNTIASISFPAAAIYAVSEQIEVRTLGPSNRTQYRQLQLIVDY

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