Scaffold Ga0315268_10107151

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10107151
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2636
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV5 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F017799	Metagenome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_101071514	F017799	GGA	METINGNDQRELEALRFSSRASRAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMSIEGIDAVEITPELKKLIYNPVGDLT
Ga0315268_101071515	F011740	N/A	VNSITTADWVTNCVTTYDAARGTAQLSCEIMQRLVEMHEMKFGSASFFCARLSTLADVSPSMFLTTIRLGSGDVHAVRQSFAEMAEGTGRTRQALHYEWAHEVAKVRMVFPELAQLMADYRQSTDEPELGDA