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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032173 Open in IMG/M |
| Scaffold ID | Ga0315268_10089878 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2893 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5106 | Long. (o) | -110.3566 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028149 | Metagenome / Metatranscriptome | 192 | N |
| F078232 | Metagenome / Metatranscriptome | 116 | N |
| F097235 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315268_100898782 | F078232 | AGGAGG | MPVLTPQELANTGGCFDCMMPVLQQTMLLSLLQQIQVASTDAARITTSPGGLLTATATAAANAGRRRFVIQNQKTTEHLHLKFGTGCTVSDYHYVLLSAATAGAHASSLTFEGYTGAISVATATGTPSYTFAEFV |
| Ga0315268_100898783 | F097235 | AGGA | MYGQMMGKRKMDGQGRMSSEVETIEFQPPQELKLNGESGSAMVEWRMTPSGTVEIVAFDGVTLGEKGPVDMAEDSAEMEMDEMEEEA |
| Ga0315268_100898784 | F028149 | AGGAG | MASGNVISCKQFQSFLVSQEPVYDKEILKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRNTYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYDAISNTQPGAFACSAGLPAIAFSWVGTGYSVLRVTNIAAAPITAASLGLLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKETFRYLSKDNPLLVSSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFVSTATAGNYRLVLPYRNVVATQGIRSEFNPDYNAAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVTGCAADPGDSAQDYNSADPACPRVIQFTAVADDATNYVIGTTGIMCDDNIVTNAGISAATVTLLVAALQARWDTEFGVGAATWSVVSGTLIQVSGTICNSVTLEFSI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |