NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224413_11792262

Scaffold Ga0224413_11792262


Overview

Basic Information
Taxon OID3300032167 Open in IMG/M
Scaffold IDGa0224413_11792262 Open in IMG/M
Source Dataset NameThree Goat Fecal Pellets
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)677
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium DNF00626(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050059Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0224413_117922621F050059N/AALTFKPRIDSNHGGTWDSPVGKLRGKASRGKHRSLDPREGKRDTAATARGESAGAFPHTRRGLTPLGRLQKYPKIHVSTGEESSGSGTDFTQGLRPRHRRERNPERPTSNSHGDWPFLRPPERVPEVPVVSREHLPQLEKIQEVLPSRRDEAHFR

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