NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315283_10357362

Scaffold Ga0315283_10357362


Overview

Basic Information
Taxon OID3300032164 Open in IMG/M
Scaffold IDGa0315283_10357362 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1588
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009267Metagenome / Metatranscriptome320N
F011222Metagenome / Metatranscriptome293N
F035667Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0315283_103573622F011222N/AMECNKKFFHTINLKCAIALATLNFKMNKPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEATDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK
Ga0315283_103573623F009267N/AMKKIKDNELRAAIFGVSVEKLEKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGAVNDRAIFINAVDSWIEKNMTHHHETGAMSDEMGKAFDLYNSASPASQPGEGSGSGN
Ga0315283_103573624F035667N/AVKITGWGFQEIMEELPFAAGLQLLHADDYVNGRHSAWANNNASVNVDAFATIEATLAKYGKI
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