Scaffold Ga0315283_10133475

Overview

Basic Information

• Taxon OID: 3300032164
• Scaffold ID: Ga0315283_10133475
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2636
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029799	Metagenome	187	Y
F041846	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315283_101334752	F041846	AGAAG	MNDAQLLVAHAVKLGLLAVLAGVLLRGRLRLCWAFPLYALAILAGNSLVTLWPARFYNASFWVLKQGVYDALKMALALELAWRALGEFPGAWRTARVVFLALLGLSTAALFLLTPRASYRTLWEWQPSVATAAVWLLTATALLVVWYQVPIHDFQRAIMLGLAPYLLVFVTLLDLLRRLGWRVRAEVGLADSLAYMGVVLFWTWAAWRRSPA
Ga0315283_101334753	F029799	GGAGG	VTPELILASAGCAALCYTLGRHNRALTLQRWHFVLNEPERQAIESLRQKMQLDSALARQALDAAERAREAHRVPDALTVLRVALSILEDAGADRLTRLRAMGVYSRMVRAIQPLPPPGPGSFRGRGLRAAASLAGLAHRFLVGTQERFRLWLLFLGLGVRIVLRSGRHSADEASQQPHLARPWDLFARGLSDFEALDASHLSAFEALAASLAAVDRGGRLRLWDRIAGDAR