Scaffold Ga0315281_10197204

Overview

Basic Information

• Taxon OID: 3300032163
• Scaffold ID: Ga0315281_10197204
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2247
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315281_101972041	F070850	AGGAG	MTEATTATTNQSITPSTGVVLLAFGKPQYYWAAYNLAFSIKKHSPNVRITVLFDDVLKAVSQCPEIVNYVEHFADINHADITTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIDELAQSGKDYISHCVGYHTIAKGRDFKEMQWAYADKMWEHFGLPSDAVMPAINSSMQWIVKGAQTQELYQQARHLYMDKTMEVKDLRQKWGGGQPDELYMNVALAILGIDPALKHYDKIKGSEGGMIHFSMQRGLNFQEITENYFLQSYYGGAGFTPRFYIDWLDRMLTADFKAIGKRHIYLLHRIAQNKYADGKR