Scaffold Ga0315281_10003400

Overview

Basic Information

• Taxon OID: 3300032163
• Scaffold ID: Ga0315281_10003400
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23294
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051486	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315281_1000340012	F051486	N/A	MKTNGTVYVAVVFAVLIGYFGYQWWLNPARAVKQRLGQVAAALSVPEGETDIARLARLAQLRRYLADDLRILAGAQEIGSRDAALAVAAGWKPEHGSGDVHFADVQVFIESETTAHAYLAVELTRLDKPSGQPTVDSRDASVSLVKRNDEWVITIAESKEPPGAR