NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1096199

Scaffold Ga0272424_1096199


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1096199 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1695
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F036504Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10961991F001253GAGGVTFIKDVMKNVLISSTMSSLNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKRFIFMLITRLSQHQMILEKTXMNKIEITIDMRNDR
Ga0272424_10961992F036504N/AMSRQETQSVEHRVNQKETLSTSEVDQRFRSSQESFTLFDNENDHHKSIKFSNLFIFIDTDESTXKSXIIKIFDKLDVNANHYSIEKLRIIYVTFRLNDDADEQIYAKHRIDAFSLYLSLTKLLKHLNEIYDDQNRNRKCRCEYNALKQSNKSFSFFYFEFTKIFSFLDYDDXTLMNDLQNKINNHLQNVLSVCLIEFSSLDKLKTFLQRVNNKQXVNYQLHDEQXTVKLIAVSKKRFVHSLTSVSTTSYVXLATFFILEPEXSRMSIICFNCKVSNHLSKNCSQLKTSTSTSRAFISRLNEIIMSKEEKKLFTEKLKNEAKN
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