Scaffold Ga0272424_1062677

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1062677
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2632
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F017767	Metagenome	238	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_10626771	F104131	N/A	MPRFFKERFEALFFIVEDNDSFAEIITPSMIMKALKKRCEELKARLQAREIISSSSIYSERSRFQKILDSSLF
Ga0272424_10626772	F007840	N/A	MIDAIERQNNTRRSIESTARLVELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINS
Ga0272424_10626774	F017767	N/A	MSMSNDSFASESLTIECVLSSNEISYLLKSLIDIKAADYSFIDEVIAQIVCD