Scaffold Ga0272424_1025244

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1025244
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6163
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011463	Metagenome	290	Y
F028367	Metagenome	191	Y
F044226	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_10252443	F028367	N/A	VLXSIYQNQCSEQXIXSFQIRFQFEFRFKKLVISSKVIKKIKIISLCKLNEILSEENYFEKFFLIDAHLISQNQFFSLCSLIDSDSVAHTLIHVNLVNKVCEKLEIQSILLTKEKLIKDYDEKISKKIITHKILLNLIIESHKKLTVSMLIVDINHHEVILSKFXMNKNEILLNMQNDVIVFLNQLNTSISIFSISLNSKHSSXSXSTLFSSITQTKISMILKQLVSITAQKESFLI
Ga0272424_10252446	F044226	N/A	MKFSDNFNIFSIISMISFYFNKDFHSQMSFDSDTTDYEITRERLKVRKADDIVI
Ga0272424_10252447	F011463	N/A	MKELLSFDHQQLKKTKLIIKAQINKHKRDIIYEINDXVXLFFKNVKIMRSCKDLKDKQLELYQITVKAKIFYHFRLSVSMKHLHSMFSSKLLQSYSEDFLSEQHAESFRLIIIDDNDDEHXKIDDILNFRRYRDRIQYKVKXKDLDRDDEXYYVDKDEFDDFEKVLNEFHTLYSRKSR