NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1022303

Scaffold Ga0272424_1022303


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1022303 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6837
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007840Metagenome343Y
F042102Metagenome158Y
F057010Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10223033F042102N/AMTRSSESASIARYELQNARRESLLSQNRTASEEEDTNASLNTEEENMNALLFDHEIIKISINTELNAXISTYEAGDIVAFIKYMCQQHDIEIEIHNDMIQMLEDVNETNITLKITQTRLQKENRNKNVIIHHLEAASSRQSTLISEDQFSKSTKLLDSPLFEDSTQNVNNXLSXMXNKLKANKNHFSIEELKIAYIESRVSEAATKHIASRMQDIFLNSFLEVEEVLSIINKMYDDFNHHHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLNDLQHKISSDLQRATLNEQIMNLNEFVNICMQVDVKLTELNVRSVIKASVTQAARSVFNTLTVQLTSPVSSXKKFRRSNLDSIQKELFKKELCFKCKKSEHRAYDCLKTTQVHEIAANSKNDLLSSK
Ga0272424_10223034F007840N/AMINAIERQNNTRESIESTARLVELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINSQIKQQKRLHLLLSSIALRSIHFF
Ga0272424_10223035F057010N/AMPRLFKERFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREITSSSSIYSECSRFQKILDSSLFTDEKNSTXKNWYEKVQNKLEINVDLFSSERVKLSYVHFRLFNDAAEITQSRRERDCFNSYKIVNELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINSQLRFAXITQLIQLSTLKEIRFYLIQLNNDQRAIXEIKNREAMIKAXTTKQIIYAEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLC
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