 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1018847 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7851 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009377 | Metagenome | 318 | Y |
| F033265 | Metagenome | 177 | Y |
| F087978 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_10188471 | F009377 | N/A | MTRSTELKSVSIAHYDFXNVRRESLLSQNXTASEEEDTNASSDTEEENMNMLLFDHEMIKISISTELNAXISAYEADDIIVFIKYICQQHDIKIEIHNDMIQMLENVNEINIMLKATQTRLQKENRNKNVIIHHLKAASSRQSTLISEDXFLKSIKLLNSSLFEDSSQNVDNXLFXMQNKLKINKNHFSIEELKIAYIKSRVSEAAIKHIASCMQNIFLNSFLKVEEVLSMINKMYDDLNHHYTTQ |
| Ga0272424_10188476 | F087978 | N/A | MFSSKLLRLYSEDSLSEQHAEFLRLIIIDDDDDEHXKINDILNFRCYRDQIQYKIKXKDLDRDDEXYYVDKDEFNDFEKVLNEFHTLYSRKLR |
| Ga0272424_10188477 | F033265 | GAG | MTSQSKKRFESCYETSIDCMIYSVLLFQTKTFNSYQLCERVFASDXESQLVYSQSIIQRLTIRRNKSIKTLNANLESTAITCRTTELNEYLXXNSATISISSXSSQXFLSTSIKIFTLEXVSIQIRLTTKSFMNDXKLEKQMILLFEXKSYXASIINNXKRRSXSSKYRSINIDKTSSMR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |