Scaffold Ga0272424_1015893

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1015893
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8933
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008169	Metagenome	337	Y
F009580	Metagenome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_10158932	F008169	N/A	MSKRSSIKEHFKEFRSCFSQISETDSLKFSSAESFINEDDESFAETVILSVSIENXKTRCMILDRETDXLNELSKQXDDEIKELKTKLQTKEITSSDFIYSEHSKSQKISDSLXFTDEKNSTWKNXYGKIQNKLEINVDLFSNERVKLSYVHFRLFNDAADVAQSRREHDCVNLYKIIDNLLKELTELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSRLQFIXIDQLVQPDSLKEIHFYLIHLNNDQRVIREIKNKVNLIKHVDDLSKIIFHKAVVTQSVDHSKFDHLKSRDAILTNVKEADVLVEICFICHKSDHSSKECSDQPIRINAVNNEYDHFEFDFDSNFNSKN
Ga0272424_10158933	F001951	GAG	MTMTKLRFIDSSRNERERDEDIVKTTVTKMMILEFKELLINAEMFLTLMNEMMTKMK
Ga0272424_10158934	F009580	N/A	MKRLRLVDKMICIQISECNLAQRLNFFCKQRDFFIYTDNIIVVDVHDTQSEELLIXAFFNNFAQMLQLAVVAQLSLVADFLDLRNDQSFILNDDNDKA