Scaffold Ga0272424_1008102

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1008102
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14811
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100810210	F104136	N/A	MIFSIRLAXIFSKSXSMNKLXIXMNSSTSACKSTFDXXNXMLNQFSRHQRLKSLTLSLASXQQSLLRSQLQSLYERNSEYRTLILLERSCLKKNSASNARSQNIKHTTVSSQFRCMKSQRIXKTICFHQSSDXERYTHILFHQHVXXFIXFQVVYCXRHLE
Ga0272424_10081023	F000597	N/A	MSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYLFIDEVIAQIVCKQLQIKLLALIKAKSIREFDDHYAKKLITHVIYSNLTVQDYMINTASMLITRLNQHQIIFEKTXMNKINLVIDMQIDFLRFSNFISS
Ga0272424_10081024	F005901	N/A	LHSYILIDELFEHLKEIYDELNRNRKCRHEYNALRQADKSFNVFYFNFMKLFSYLEYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQXVNYQLRSQLCTVIVKVTVVSDKHAATSLSVMTSIIDYVKSIIFSIIFSIFKSDQAKLSIICYICKISRHLFKNCSQNKINTSASHAFTFRLHEIIISKNKENEKMFFENSETKN