Scaffold Ga0272424

Basic Information
Taxon OID	3300032162 Open in IMG/M
Scaffold ID	Ga0272424_1006363 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032162 Open in IMG/M

Scaffold ID

Ga0272424_1006363 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17620
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (28.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17620

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (28.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025887	Metagenome	199	Y
F057012	Metagenome	136	Y
F086376	Metagenome	110	Y
F098340	Metagenome	103	Y
F104132	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100636310	F098340	N/A	MIKVVAYQTLVKNKKIKIFFLIISKINKVLSSVEDFMKLNKVIFVMSLSELKKKLSIVYHNFLDIFDREKTTQLSLH
Ga0272424_100636318	F104132	AGAAG	MNEILNFQVKNSQLEYLIKXTEIEENSXVKFANVMNVIEVMNVYHAXNLDRSSKNSXITYVQESNDSEYESKN
Ga0272424_100636320	F025887	N/A	MTENDILIFCFISMSDDSFNFKSFIIDVILSNLKKIFRFLALINIEVIDMTFIDESLMSELCERFDIQSISLLKSKSI
Ga0272424_100636323	F086376	N/A	MIRSSKSASIARYDLQNARKESLLSQNXTASEEEDTNASSDTEEKNMNALLFDHKMIKISISTELNAXISIHEADDIIVFIKYICQQHDIKIKTHNDMIQMLENVNEINITLKIIQTRLQKENRNKNVIIHHLKVASSXQSTLISED
Ga0272424_10063633	F057012	N/A	MSDDSFDFKSFIVDVILSSLEKIFRFLALINTEVTDMTFIDESLMSELCERFDIQSISLLKSKLIQLYDEISDXKLITHALYTLIMIQEHKNEMMFLLITHLDQHKIIIKNFXLKRNQILINFANDXLISSLKIQTSKSVVSKVSSQSAFYRSESSKICKMKRKNLNLIVTSTIILKQLTNQKLVNQFIESVQFIESLFLVKSSTQVDLDQSQLIQSSKKEEFINIVIIEVAVY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272424_1006363

Overview

Ecosystem & Geography

Associated Families

Sequences