Scaffold Ga0272424_1003838

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1003838
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24944
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (39.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F089602	Metagenome	108	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100383818	F104134	N/A	MSSLFSLQSNMIRFLXSVNTSAIFCRICSINFFCISFISLLFIILIMTSYFLQSNDKLSLRRYFFITISSLVTFAHDVIFVERHVLFCVCNCLLSSXTEIFNFYTFFMMNVFXFAXCFSSELSXRCXISFNAIFFHEXSLLFSFSNVDIFISRSIMLAMFFLSLHKHFDLASLFSCDKSTSLTIIFESALLQFMQFIVVSLSSRFTLSCL
Ga0272424_100383825	F089602	N/A	MKDEXLSFIKILSEEDDDLSEIINIAFQTVNQXEIFHQRIFFLLIKEIVIVDKAIHVLLQSFTKI
Ga0272424_100383826	F001951	N/A	MIMTKLRFIDSSRDERERDKDTVETTVTEMMIFKLKELLVNAKMLLTLMNETMMKTKRD
Ga0272424_100383827	F009580	GAG	MIYIQISEHDLAQKLNFFCRQRDFFIYTDNITIIDVHDMQSEKLLIXAFFSNFAXMLQFAVVAQLSLVADFLDLRNDQSLILNNDNDKT