Scaffold Ga0272424_1003719

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1003719
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25397
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (31.03%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F009580	Metagenome	315	Y
F013598	Metagenome	269	Y
F020121	Metagenome	225	Y
F080690	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100371915	F000597	N/A	VTFIKNAMKDVLISSTMSSSDDLFASKSLTIECVLSSNEISYSLKSLIDIEAADYSFINEVIAQIVYDQLQIESLTLIKAKSIREFDDHYAKKFITHVIYLNLTV
Ga0272424_10037192	F080690	N/A	MKSFYNFLINDERAAEQFAQSVVKNSVKAFRVMRELQNQVQQHDVIILFLFIVFSSSVYIELNSQFLAMIAQIITQILNNQSFFVVHLFANSVAAFIASRFKKLFDIFKYERNKDQLNAXEQSLIQRMNVNDDHYLFHRVKIIYVESXLIIGKKTHNLMSQYRVNDLCIIFTFADXQHKLRHCCDNSFETEDAHLYLRETLKQDTNSFADYYNLFYQKKEHSLMKDFSLIDCLKRNVNYF
Ga0272424_100371921	F013598	N/A	MNFIIDLFDSSKYNAILTIICKLSKERHYISCIINDEDITVEKTAEMLIQ
Ga0272424_100371926	F000597	GAGG	VTFIKDAMKDVLISSTMSSSDDLFASKFLTTECVLSSNEISYSLKSLIDIEAADYLFIDEVIAQIVCDQLQIKSLTLIKVKSIXEFDDHYAKKLITYVIYLNLTV
Ga0272424_10037193	F009580	GAG	MICIQISERDLAQKLNFSRRQRDFFIYTDDVTVVDVHDTQSEELLIXAFFSNFARMLQLAVVAQLSLVADFLDLRNDQSLILNDDNDEA
Ga0272424_10037195	F020121	GAG	MKKLTEHLRDEMLIAQIIYEFHVNLFRRSCFKYFVEDEVXLNARNLSIARLAVKLDNHNVDFFKIKHVFKNNSLVIELNLSIFMKIHSIFHVTLLNHIASDLLSNQRQKSXELIVIKNDKRFXYVNSILNFKRDRCYNSSLLKYYIDXENHFSTXESFNLLNNCEQMLDEYHLVNSVVEESHVLSCVISQCQCQEL