Scaffold Ga0272424_1003124

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1003124
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28328
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009377	Metagenome	318	Y
F010214	Metagenome	306	Y
F091080	Metagenome	107	Y
F104135	Metagenome	100	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100312411	F091080	N/A	MIILCXSRXVINKDIISFLCFCIMINVYKACIIDFQSKILSYDXINFDFDSDINXISKRSHSFDIKDSSMKVMSVTLIFIRERNLNIFSRLFKMMLTVNDLKSNESSDMLMKQNMSISLSVTTLMRVSHFSNSLQFHASELIQDSHILYVLTSCIXSKVLF
Ga0272424_100312418	F010214	N/A	MKVSVLFDYDTSSLLCSSLTIFYTTMFRFDSQFKDERHFLCIHDVHDCNVRRAVFSYSMIVIHXAEKYVMKERCTQXEDRVXLYXVTLFFFXFDLCHVDVEXIVSINVQLQSFNVXLXSMKENAFXLFSXALDFPRE
Ga0272424_10031242	F104136	N/A	MIFSIRLAQIFSESXSINKLXIXMNSLTFACKSTFDXQNXMLNQFSRYQXFKSLALLLASXRXSLLRSQLQSLHERNSEYXTLILLERSCLKKNSASNARSQNIKHTTVLNQLRCTKSQRIXKMTCSRQSSDXKRYTHILFHQHVXXFIXFQVVHCXHHLE
Ga0272424_100312421	F010214	GAG	MKVSVLFNYDTSFLFCFLLMIFYTIMSRFDSXFKDERRFLCIHNACDCNIHKAVFSHSMIIIHXAEKYVMKERCIXXRDKVXLYXVTFFFSXFDLCHVNVEXIVSIDVQLQSFNVXLXSMKENAFXSFSXTLNFSCR
Ga0272424_100312422	F104135	GAG	MIITNVQSIFIIXDAFINLVAXLKINLRKKRVLSSKXFQDKDSYDRDKINKKTYSKXKKFHXSTKLDFSLKISLHISSRYSKNLFNIMCYICNQKNHYFTDCKDEKIKNRSKESDVNRVFIDLMSHMSCFKILKKGKLSMNASNHREKNKKFSS
Ga0272424_10031243	F009377	N/A	MTRSTELESESVSTTHYELQNAERESLLSQNXTASEEEDTNASLNIEEKNMNALFFNHEMIKISISTELNAXIDAHEADNLVAFIKYIYQQYDIEIKTHNDMIQMLNDINKINIKLKAINNKLKATQTTLNVVQTRLQKKMKKKNMIIHHLEATSSXLSTLILKNRFSKLIKLSDSSLFEDSRQNVNN
Ga0272424_10031249	F009377	N/A	MIRSTELESESISTTCYEFQDAEKESLLSQNXTASEEKDMNASLNIKEENMNALLFDHKMIKISISTELNAXISIHEADNLVAFIKYMYQQHDIKIKIHNDMIQMLNDINKINIELKAIKIKLKVTQTMLNVVQTHLQKEMKKKNVIIHHLEATSSXLSTSISKDRFLKSIKLSDSSLFEDSRHNVNN