Scaffold Ga0272424_1002706

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1002706
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31301
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019584	Metagenome	228	Y
F037509	Metagenome	167	Y
F065269	Metagenome	127	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100270612	F065269	N/A	MIRSSETASIAHYELXNTRRESLLSQNQTASEEENMNASSNTEEKNMNILLFDHEMIKISISTELNA
Ga0272424_100270619	F037509	N/A	MILISILIQIHLTDNEINIKKFVYLMINDIERQNNIKKSIESIKTYDHVIAKESIAQSVASVQIN
Ga0272424_100270620	F083460	GAG	MQLQIKSSDSQAYSDALLELNASSNKYAIRRXLHELLNHCFNHEESQDNSENDDENKAVEAV
Ga0272424_100270625	F019584	GAG	MIKAKTTKQIIFAEESVKAIRRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSLNFNSESDSKN