Scaffold Ga0272424_1002409

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1002409
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33460
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (23.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F010214	Metagenome	306	Y
F038484	Metagenome	165	Y
F057011	Metagenome	136	Y
F059497	Metagenome	133	Y
F075494	Metagenome	118	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100240913	F038484	N/A	MLLLVEIITKKRMYHLHLNCIFASSXMKTFRSIIFLMMSKRKVMQLTLVKXACINLHAYLISCVQLLIQLCSMILFCNMFKXTYNELVYVSVFRVSMFTLLNTFATXHKVXFXSVSSLYSLFNSSSFLSCXCQTDALNAISDFTTAEYTCFAFVKIASHVKTSRXLNISILMMXFIFIYQRCTSHCSFMFSCIFKTHTFNFNLITELSIYMLIIMSNLFNFLVKCVSSYFFDANVASXMQTHFTQTLYALLNVLQISSMNLL
Ga0272424_100240918	F075494	N/A	MINDVEKMFIHNVSERKYSVDHVKSMLSDEIYYTXVINEVEKMSVHSINENTSTCSAMHVRSMLLRIMILIMQKMHLNEVHFLRNKISQSEFENLRKHDDEMLIHKDCNITEKQLNSVAETIDCKQLILHAIVKVLTIHETTYNFSSKFIIEFIKILQQEDEFVVKLKADKTMSIXKNDIEA
Ga0272424_100240925	F096307	AGAAG	MLYIVVTQIDASLKEDVLKHKKDVDLKNVCDTKKCVYYRNLLIIHNTKKCVCLEDNRSXLEDARKEKDAESYLSQIXVKFRSDFN
Ga0272424_100240928	F057011	GAG	LCSQIEVLLKENYFEKSFLINASLISQSNSFSLRSLINSDFIVYMLIHDQLVDKVCQKLEIQFISLAKEKLIXDYDEKLARKTITYKILFNLTIESHKKLTMSMLIADIKHHEAILSKLXMNKNEILLNMRHDTIVFSDQLDISISIFSILSNMKHSSXLQLTSISSAAHSKISRVLKHSVSIIQKESFSIQNIDIISFQALVKRKKKN
Ga0272424_100240929	F059497	GAG	MFIKDIDREIIYNTQCKLDVIDIFSVDETTQNLEDIKVKLSSKYQNFLDIFDXAQVDKLSFHHSYDHKIELTSDTTSSCCRAY
Ga0272424_10024093	F000597	N/A	MKDVLISSMINMSNDSFASESLTIECVLSSNEISYSLKSLIDIKAADYLFINEVIMQIVCDQLQIESLTLIKAKSIREFNDHYAKKLITHVIYLNLTVQDHMIDIIFMLII
Ga0272424_10024096	F010214	N/A	MRVSVLFDYDTSSLFYFSLMIFYTMMFXFNSRFKDERRFLCTYDVHDCNVCRAVFSYSMIVIHXAEKYVMKERCTRXEDKVXLYXVTLFFSXFDLCHVDIEXIVSINMRLQSFDVXLXSMKENAFXLFSXALNFSCE