Scaffold Ga0272424_1002203

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1002203
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35419
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F021216	Metagenome	219	Y
F021452	Metagenome	218	Y
F041516	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100220316	F021452	N/A	VTESNILIFCFISMSDDSFDFKSFTVNIILSSLEKIFRFLVLINTEVIDMTFIDESLMSKLCERFDIQSISLLKSKLIQLYNEISDXKLITYALYTLIMIQEHKNEIMSLLITHLDQHKIIIENLXLKRNQILVNSAND
Ga0272424_100220323	F041516	N/A	MTQKVIHIHEAYNSSLRDHEVIHEKESLSNIKKMLYMLKECILVKDFNLHYFT
Ga0272424_100220332	F021216	N/A	MKSRMKSNAMRREHHELKKTLRNHERSNNDHSNNTFNKHTELISSCDIIKESNEREKK
Ga0272424_100220334	F009580	N/A	MICIQIFKRNLAQKLNFSYKQQDFFIYIDDITIVNVHDMQSEKLFIXAFFSDFAXMLQFAIVAQLSLVADFLDFKNDQSLILNNNNDKA