Scaffold Ga0272424_1001784

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1001784
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40164
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (29.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035571	Metagenome	171	Y
F050043	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100178411	F050043	N/A	VSLHIHDLXFRSFTLTIQIYSRFVKSNHTMIKIXSXLKEDEVEENEKLRKIERAINKSIIIIHFCLHFIISTTSSTQKINNVYVLFTRHHCCYLHQLHITYTIYNVIYTHYNQRXIIIQLKVSLFLVFSQRFEDFYRELLEXINECTSSFIKVNKDINYXDREXTHLEEKTIVMMN
Ga0272424_10017846	F035571	N/A	MYISVFRVSMLTLLNAFATXCRVXFXSVSNLHSLLNSSFFLSRXCQIDASNVISDLITAEYTCLAFVKIASHVKTSKXLSVSILVTXFIFICXRCTSYCSFMFSCIFRTHTSDFNLITELFICMLVIMLNLFNFLVKCMNSYFSDANVASXVHAYFMQTSCALLNVLQISSVNLL