Scaffold Ga0272424_1000683

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1000683
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69187
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (17.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F010214	Metagenome	306	Y
F021216	Metagenome	219	Y
F042102	Metagenome	158	Y
F057012	Metagenome	136	Y
F070710	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100068323	F021216	N/A	MKSRMKSNAMKREHHELKKAFRNHECSNNDHSNDTLNEHIKSILSCDIIEKSDEREKK
Ga0272424_100068335	F010214	N/A	MRMFMLFDYDTSSLLCSSLMIFYTMMFXFDSXFKDKRCFLCTHDAHDCNVHKAVFSYSMIVIHXAEKYVMKERCTQXRDKVXLYXVILFFFXFDLCHVDVEXIVSINVQSQSFDVXLXSMKENAFXLFSXALDFSRE
Ga0272424_100068340	F070710	N/A	MIKQSFLQILQYNIRKSLRIQESFLINREVREFNIVTIQKQDCNNNDSQSFNSAHNFFHLVKNSSSQSRTCIYVNKHLRLNQXIVETAESDICSIRILTCNTDNKTQTLRLLNVYNSCSLFTTFTKRSSIISRLNKLLKNDCKQLIVKDFNLHHSH
Ga0272424_100068347	F057012	N/A	MSDDSFDFKSFTVNIILSSLEKIFRFLALIDTEVTDMTFIDESLMSELCERFDIQSILLSKSKLIXSYDEISDXKSITHALYTLIMIQEHKNEMMFLLIIYLDQHKIIIENSWLKRNQMLVNSANNRLISSLKIRTLKSVVSKASSQSAFYRFESNKICKMKXKNLNSIVTLMIILKKLMNQKSVNRFIELTRFIEPAFIAKQSIQVDLDQLRFFQSTETKKLVNIVMIEVAAY
Ga0272424_100068348	F042102	N/A	MIKISISTELNAXISTHEADDIIVFIKYMYQQHDIEIKTYNDMIQMLEDVNEINITLKATQTRLQKEMRNKNVIIHHLETASSQQSTLISEDHFSKSIKLLNSFLFEDSTQNVNNXLFXMXNKLKTNKNHFSIKELKIAYIESRVNETAIKHIATXMRNMITNSFLEAEKILSIINKMYNDFNHHHMTQQQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLDNLQHKISSNLQRATLNEXITNLNKFINICMQVDVKLTELNVQSIVKVSAISAARSVASTSSAQLTSSVSAXKKLRRSNLNFIQKELFKKELCFKCKKSEHRTYDCFKMT
Ga0272424_100068360	F000597	GAG	VTFIKDAMKNVLISSMMSMSDDSFASESLTVECVLFSNEISYSLKSLIDIEAADYSFIDEVIAQSVCDQLQIKSLTLIKAKSIQEFNDHYAKKLITYVIYSNLTIQDHMINITFMLITQL