Scaffold Ga0272424_1000523

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1000523
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78914
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (4.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F064254	Metagenome	128	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100052311	F083460	N/A	MQLRMKSSDSQAYFDALFELNASLIEYAMRHRLHELLSHHLNHEESQDNSENNDENKAAEAV
Ga0272424_10005234	F005901	N/A	LHSYTSIYKLFEHLKEIYNELNKNXKCHRKYNALRQADKSFNVFYFNFMKLFSYLEYNDCTLINDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCIIIIKVTVISDKRVTFLSVTTLIIDYVKSIIFSISEFNRAKSSIICYICKTSSHLFKNCSQNKINISTSQAFTLRLHEIVILENKENEKMSFKNNETKN
Ga0272424_100052346	F064254	N/A	MQELYKLVSFLLFLSFIXLFNNVTVXNXFSMLVESIIXMIIVIMLMISRSFLKFVIFSSHCIVFCFTFHLKHVNKMCLINIXSLLHLHIIIATSSTHLSCRNXLKSIFLMHSCISNALXDFAXSLCRCRCXXVISDVKYQKXAALNLFLQTTLYICLICFCMSISHVIISVRXCLISDRDNSYTLSIILFAASFLSTSAYSVIQCNFSVTS
Ga0272424_10005235	F000597	GAG	VTFIKDAMKDVLISSMTSMSNDSFASESLTIECVLSSNEISYLLKSLIDTEAANYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLIIHVIYLNLTVQDHMIDTASMLITRLNQHQMILRKTXMNKI