Scaffold Ga0311301_11722568

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311301_11722568

Scaffold Ga0311301_11722568

Overview

Basic Information
Taxon OID	3300032160 Open in IMG/M
Scaffold ID	Ga0311301_11722568 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly (MetaSPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	753
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009115	Metagenome / Metatranscriptome	322	Y
F015905	Metagenome / Metatranscriptome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_117225681	F009115	AGGAGG	MSVVIDVAKQVIRDKFVAEIQTAKAKLETLKAEAATAKADFEIKAITELLAK
Ga0311301_117225682	F015905	N/A	DPKQPSFYLIKALGSEQAGLTGVKGTIVRKAAVSRAVSNLEKALAAIRDTIQSQ

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