NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10984635

Scaffold Ga0311301_10984635


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10984635 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F002408Metagenome / Metatranscriptome562Y
F072572Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0311301_109846351F002408N/AVSSRLSYELVPAVSDAAQMDFAIDYRQPQPQAQVTKPKPPEPVAVVSTVPSEMLLSSTPVRLVGGAAAPKANLGVLIRDVYRRQDEVFVRYSIENHSTQTLRTGAPAVVSLTGLKFDRSLWTFQNAQLGMEYDSRLKTYDAPIPVKIRQCDPGVAEVGPGGTRIGLIALQLPAVNPDAKKTQPTVLKILFPIDRSGNLTATLVL
Ga0311301_109846352F001473GGAGMESEYQTVGQMYERLRLMIRQRNDTGFRLAVTDAVLEPRNPFEPASKRRPKSVVSIALILVLVLALIFLYFSLHHTT
Ga0311301_109846353F072572AGGAGMASSATKMANEPEGAGEERQPDVQLQDVLFSALASSVCYWTTIFLLAIVGAYLIQWWLTHPGPYPAPAND
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