Scaffold Ga0311301_10355054

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10355054
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2289
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002448	Metagenome / Metatranscriptome	558	Y
F007212	Metagenome / Metatranscriptome	355	Y
F010139	Metagenome / Metatranscriptome	308	Y
F070324	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_103550543	F007212	N/A	MSDWPTIDAAVNAIMQETFGEPVVYQSVQAGFAAGDPVSITAIRHARVREESGAFANVEEISVNPTDLPNFPQRGDWVTAWGSQFVVTTVRQTDPYGLVELSLMARAGQVPND
Ga0311301_103550544	F002448	AGG	MINPKTILAEWVTALQALPHLLEALGGDGDSIQFYTENAIVFGQPTRNNIRLAILSMPPGSVMIAWQGSGPGRLGNALVFVHDFSLYLHAPEEADVGYEDLFNWIVNDIPAGGSLRMLHTQVDPNCEPMDFYLPSARRNTVVISPDGATFEYFEVPVRLIESYNP
Ga0311301_103550545	F010139	AGGA	MTADLVFLESPQGDEIKEVEATAEKLSPFLAQGWHQIPAPAGHKPSSVQEEK
Ga0311301_103550546	F070324	AGGAGG	MANINELMNGWGFGKQTAIGTANTVATIWRHTNLNTKPWAKVPVNEDDRAEI