Scaffold Ga0311301_10246074

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10246074
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2959
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F073304	Metagenome	120	N
F093562	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_102460742	F073304	AGGA	MATRSWHSRDFPGWRIWLISRLSRLRNIKNLAPGELTFAGGLVLLLAASILWRAFAMAMTGAGLVLILQEIVDPSPLFLAVPWEALEFVLSRKVRANHFWLHRTQGLLRESGASLARIDGCATREGFFLIGASFNETQIQWASRAAWRTTCQKPPEKEAATGCKTMKFLLALWLIAGGFAVLSLFRGVDLRSGLLLCGLCGAAGQLLASPAEKLLGPWAGRLASSNKETWPSRLDVESLAIPRFLWFKRSLVFHVRRTPAQESNEDQTR
Ga0311301_102460743	F093562	GAGG	MSTRLRLLSEAEKRVSNPFLLCTLVSQRTLQLMMAGNPNTSTAQLVNSALNELIIGALEFERGGPRRALLIRAESGQQEIDGGLEAPRVPPVSRALSAEAP
Ga0311301_102460744	F019704	GGAGG	MKMRIKVRDLMQRDGLRGEIVQLFHSRSAGMIHGDDGYDVTFNEESLVVGMSYGDLSLGLKVSYGIFFATGAKLPSAINVQPAVGGPTETTEDAGRAISTRAGVTGIV
Ga0311301_102460747	F014771	AGGAG	MKARGSITQLLRNRRPGYILGEDGCLVAFDESSLQGLDPQELLVGDWVEYDELDPREGRRAATIKPLIQRAEE