Scaffold Ga0311301_10233966

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10233966
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3066
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F010114	Metagenome / Metatranscriptome	308	Y
F036885	Metagenome	169	Y
F094236	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_102339661	F094236	N/A	RCPACRTVRAALLSIANLVPADLAVGANFPTYNIDSHSGEILCLPALGNRAAVWVSIYLSWNRSNGQSLETDLLTEVRTLLNKWGIHQR
Ga0311301_102339663	F001596	AGGAG	MSWFHSSTAPVDARNHASPAEVVACFQDQGNDLRQLALLITGDRATADQAVLEACEITLQGNSPFRDWLFEWAKAATIASAILHGLKAIRICEATYKDQRCLHVEHLSQGDAEERAAGLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSLQDCALRLNVSRAAVLAANCHALTWLHDSHARSVEENHDASLTV
Ga0311301_102339664	F010114	GAGG	MIIELNDDDTRLLHTVLLEQAQEHLSYADTSEVAERLYRLATRFERPPTWAK
Ga0311301_102339665	F036885	GGGGG	MADKKDRERVIAEITLSHLMRLGNEQGCPVSREQALAFLNHQGRAFEMWKHMMQAAEEFIANSLFQHSFSSGGHNGFASRPRPVRSVGNAAL