Scaffold Ga0311301_10163919

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10163919
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3957
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F010114	Metagenome / Metatranscriptome	308	Y
F033181	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_101639192	F001596	AGGAG	MSWFHSSTAPVDARNHASPAEVVACFQDQRNVMGRLAFLITGDQATADQAVVQSCEITLQGNSPFRDWLVEWAKAATIASAILHGTEAIRVREAAYKDRRCPHDEHLSQGDAEERAASLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVFRAAVLGANCHAMTWLHDGHVKAAEENHDASHAV
Ga0311301_101639193	F010114	GAGG	MIIELNDDETRLLYNVLLEQAQEHYSYASTSEVAERLCQLATRFRRPVRELLNITIV
Ga0311301_101639197	F033181	N/A	GFIQWDEKKELNMSFEAAWGFDPDRAIQAQGLSLSEIETDKFTYSAEEQRAARIPSDVHAQVYELRRMYRL