Scaffold Ga0311301_10152526

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10152526
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4171
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002288	Metagenome / Metatranscriptome	574	Y
F002929	Metagenome / Metatranscriptome	520	Y
F036259	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_101525261	F002929	AGGTGG	MSQSFRPVKETWNMHSSCFVEPEELMALLHDLAARVGTASDEHEYGDNKAVWLEDGKKVLDYMETDERFNAASLKDSMEEQGVVINQNDMTTLIDNMRSLVKEWRSSIGERGELVFYIDA
Ga0311301_101525262	F036259	GAG	MFGTHRRGFDWKEIAEVLHMTRAVARAPFWREIKRSWSKKVAARPPATVGQEGRDPDTLKGGKPGPSR
Ga0311301_101525263	F002288	GGAGG	VQTGLILTARRTRAPEAGSMGEIDGVHKRRVFRWPKEARELVREYKERTSRSQEHNETGRRMLVTKLATISGNPRDACLRFLRELGVNQKRAYREWTKAEQQRLLDLITAMPVEDAAKILRRPAGSIRSMLHRLGIGGTTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRSLTTAGTKAKIIHADDFCQFVKEHGRAVVSRRLTYDALWFVQNYVFPPSHAELLSVRGTYKRQAASGETDANTEPQSAGASEEEGGQEG