Scaffold Ga0311301_10086170

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10086170
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6357
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012896	Metagenome / Metatranscriptome	276	Y
F017879	Metagenome / Metatranscriptome	238	Y
F021618	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_100861701	F017879	GAGG	MSKKLAMTPTIKSSNLSTPEKVACPKCDASLIFYRSNKPHIDECGFESYRFKCRACGSMLTGIIDPADDALLVTVSS
Ga0311301_1008617012	F021618	N/A	MRDQTSEAFAYIEREYNDVKGRVELQRHVVAQLHRVEADAGEAEAALNALLDDETSKLRILDYLRRWLGDKPEEMPPVSST
Ga0311301_100861707	F012896	AGGAGG	MSGTRREIATGLNESQVVRLFKCAVKDDGTLVDVIVEKLYGIMRDFDAGRAKKTVELIVDRDTAAASKFRALLDDLWSRGTSDLAA