Scaffold Ga0311301

Basic Information
Taxon OID	3300032160 Open in IMG/M
Scaffold ID	Ga0311301_10073510 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly (MetaSPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032160 Open in IMG/M

Scaffold ID

Ga0311301_10073510 Open in IMG/M

Source Dataset Name

Sb_50d combined assembly (MetaSPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7157
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7157

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006480	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_100735103	F000696	GGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDVLLVVPAVAETDTSLQVSISDATAPPNQLPTDLLVPVKIWERPNGSSDDFLEMVDLSQHGGLPSRAQDVTLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDEAAADAVEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0311301_100735104	F000739	GGTGG	MSRLSIWLKGILAAAISGAAGGVLTGFAAVGIDPQHFNLQAGTGATFRIGAAAALINAVIGVAAYLQKSPLPQ
Ga0311301_100735106	F000512	N/A	MIRVVRETHDTPESVAHRLEQAGGRNRLGEPNYRAVWGWNRLAWIGGKFTEYDPATGSLLREVVELRQEPKYPAVNRWHIERWVAPESYGSPRAWYAQTIERENGISIPALGPYPSRGEYEHCFTLEGPRGEFIQLTPTIAEHLARAIEWSRRCPRAKSRTQLYEREAREDRSYEHWAYDLLDDAVPAFHKQPFVAVV
Ga0311301_100735107	F006480	N/A	MRRTLIAGVALLLCGGISARTKPDPVMFVFLRVDSHQDVAILRPMIAPDIGVQLATGSRNLDPGTVLRCESSVREHDALVENRIAKVSDLLLDCGEQKFVVKTIEFSPRAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0311301_10073510

Overview

Ecosystem & Geography

Associated Families

Sequences