Scaffold Ga0311301_10044702

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10044702
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10456
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000410	Metagenome / Metatranscriptome	1170	Y
F013037	Metagenome / Metatranscriptome	275	Y
F054324	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1004470210	F054324	GGAGG	MCPVHWDHTDHARSTRYVKQDWERLYRAAVLESDRSKLLRRIEVAEAAILERSRSLSKPPGNNGEEQDAITRALHILSMLRKAGQEQ
Ga0311301_1004470211	F000410	AGG	MSRKLVWIEQRHFRGFGCSECGWRFKPSGPPTGTSFDEMMRNFELQRDKEFTLHVCAEHPRAGNTRSKNTE
Ga0311301_1004470212	F013037	GAGG	VESKGLQVVQSGERTNTEGKPVGNLILLSISDSDYSSLRPHLEYVSLPNHLVLHEG