Scaffold Ga0311301_10035840

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10035840
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12374
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F036810	Metagenome	169	Y
F041733	Metagenome / Metatranscriptome	159	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_100358402	F036810	AGGAG	MSQPGRACVSAWIRLRSFVVGKYKAVQLSIERRSFERKLESIVRAALAHQSSGLPAGNRQYKLLRQLADSTCAEFASRWNIDPDLIDAQIPAIRKLKSLADPPPKPKPAVLVSLGFVAAMALFFLMGILAGLTSVGYHLIGGR
Ga0311301_100358403	F070426	GGAGG	MILELILATEVSVLAASWIRRSRKRRQEVLLGGNTPEVNLPFLDQYLRQQTTNQTRLQIYAAQKLAAVCRHAVHTQAFELLVLKLIQSASRRYRRESEISKVEVIL
Ga0311301_100358405	F014894	AGGAGG	MRMSIGIPGFSIYFEHHQIKPFIKNQSEKAKDLFNERVVPAVLRGTCTALEVVANNTADAHDYLISKLKTKQSA
Ga0311301_100358409	F041733	AGGAGG	MFAIKPDGKKKITFTDLLICGVLGAAWLPLGIAAAAGIGGYKYWQSKTEKWAEEQKIGHQEEVKRLKD