Scaffold Ga0311301_10030080

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10030080
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14143
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F036872	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1003008010	F036872	AGGAG	MKNAHLRFGWLTYVKSTEKTTTSIKLRLDRFIGEVLPDPPRQAKAHLISVVGGDTQVSAISAAISMGDRFMVEGPGVQPIRVCLERNAQCFKGSIQLRERKKPLRHLIGFSEEFASGNMSVGSGRTLLAGSDQRLVWASIAHIYGIPGIPEWAEWFADELDTHRALIRALGIGCDPVIVKGEKEQFLDWLSWGVESGAISFPAATGSIRWPSLSLKDIFSQPLGS
Ga0311301_100300803	F000208	GAGG	MRIRVTTRAGLFEERKQQHIEHGYRIEDERPIPVNGLCSFIAVREIPNADALSELVAQALNGRHGTRGDC