Scaffold Ga0311301_10028199

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10028199
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14852
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019806	Metagenome	227	Y
F030229	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1002819914	F019806	AGGAGG	MKSLACLEQVDHTRKAAIYAAAHDGKLRNFAYDEELGECRETFSRLLYAVQEGEFGVILTPDAASLAIETSPAWMEAFIQAVKEHEVLIGDHEHELVYDLREEEDEARFRSLSSPDEYERERNAPRPLVDAIAQSPFAAAYIERGDNWFMSTRLEGRGPGESIYSLSSGAIGQDVDMFALGRWKELLGILVPYGISKQSGWCPVPPERRDWLSRTQQQEDAMAAQSADAMEPHRASLPQGAHVRVILPALWQARSKPSRKRGGRKR
Ga0311301_100281993	F030229	N/A	MLLCWMRSYVGDEECSCGASPDYEIDSFVDAEGLLEPEDPGEKDQLLLSYLEQQRNGAFAVYHTFLVCRQHALELFTDLYGEQDAQQALSPLLFGISNLTVTVGREIITANSPHGTLQVSYTNATAVSEVIEAHTGYIVTKSPKRPSAE