Scaffold Ga0311301_10026637

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10026637
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15488
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000702	Metagenome / Metatranscriptome	929	Y
F018405	Metagenome / Metatranscriptome	235	Y
F021606	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1002663721	F018405	GGA	MTCFLALELEIAFVNRTDIYRQAIKRTFADLYSVARHEVDVSWNKDGDNITVRCADKTFTHETIHDDDDGALEFVSTHEDPVTVRLTNDEHLRLEQTDLDRLNGF
Ga0311301_1002663724	F000702	AGGAG	MRKVLRGYAKGKDANLVLIGTMPVPHSKDKSSPRERKDKRHLVRQGATIFKKETLG
Ga0311301_100266375	F021606	GGTGG	MKSAIAAHLPDEHFVIRVDGRVKSHHRRFLDALREGLQLRDQFPQHDVKVQSMQADGQQRTALH