NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10018401

Scaffold Ga0311301_10018401


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10018401 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20158
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028953Metagenome / Metatranscriptome190Y
F065335Metagenome / Metatranscriptome127Y
F102308Metagenome / Metatranscriptome101N
F105715Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1001840110F028953GGAGMSVTLTFVHKWVRWYRVLRYGKAFSFVDSMRYGLWLARS
Ga0311301_1001840112F065335AGGAGGMATIITPANITIDLAADGALVAAAFTSHECAYCLSPIGSGQRWVREKIYEPSTDNGPRYRRYHADLLADEELSCWEKRVMELEIARTARTALRIM
Ga0311301_1001840116F102308AGGAGMCRIHSTKTKIAEAKRSSTLEILARLEDEHEILSRLAFVVTGDIGTAERSVSEARELVTNGARPLLFSEQLTQWLKWVTIEAAMINSLHEIARYEARYVNQNCTHSEHLLNGNDSKLWEFRNFLLHIDPEIVIAELDPLARAVAVLRTTARASILDCILRLKLSLDTVLAANCRAMTWFAEKRTGLSDKATTPEPKQENP
Ga0311301_1001840117F105715AGGAMLRAEFNHKNKSLTLRLEGRLVGAWAVQVKSLVSRHFVSNGLLVDMSEVTYVDSVGERLLLWLRDLHARFVGETCYARDICERLHLTLQGDADGPVPSAAEVSPS

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