Scaffold Ga0311301_10018401

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10018401
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20158
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028953	Metagenome / Metatranscriptome	190	Y
F065335	Metagenome / Metatranscriptome	127	Y
F102308	Metagenome / Metatranscriptome	101	N
F105715	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1001840110	F028953	GGAG	MSVTLTFVHKWVRWYRVLRYGKAFSFVDSMRYGLWLARS
Ga0311301_1001840112	F065335	AGGAGG	MATIITPANITIDLAADGALVAAAFTSHECAYCLSPIGSGQRWVREKIYEPSTDNGPRYRRYHADLLADEELSCWEKRVMELEIARTARTALRIM
Ga0311301_1001840116	F102308	AGGAG	MCRIHSTKTKIAEAKRSSTLEILARLEDEHEILSRLAFVVTGDIGTAERSVSEARELVTNGARPLLFSEQLTQWLKWVTIEAAMINSLHEIARYEARYVNQNCTHSEHLLNGNDSKLWEFRNFLLHIDPEIVIAELDPLARAVAVLRTTARASILDCILRLKLSLDTVLAANCRAMTWFAEKRTGLSDKATTPEPKQENP
Ga0311301_1001840117	F105715	AGGA	MLRAEFNHKNKSLTLRLEGRLVGAWAVQVKSLVSRHFVSNGLLVDMSEVTYVDSVGERLLLWLRDLHARFVGETCYARDICERLHLTLQGDADGPVPSAAEVSPS