Scaffold Ga0311301_10017951

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10017951
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20528
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002897	Metagenome / Metatranscriptome	522	Y
F009276	Metagenome / Metatranscriptome	320	Y
F028885	Metagenome / Metatranscriptome	190	Y
F054181	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1001795110	F028885	GGAGG	MWILVLLLNLLGGKNFLRFLAGWMLIMAFFLYCFVHEAFDQPRPTQRVAVPHMERRRVDPVSASTSEH
Ga0311301_1001795113	F054181	N/A	MDLNPPPRRRKTRSDLVHLRSLLTVQPATNTGQVTAAWREIEAGLARGMKLREVWEAAKLDGLEIPYPQFRVYVSRVRRRRQGSSTSATQPPHALVNGERGVPAPQPLDPFNNLREQREKKEQSGFEYDPFSINKNLIG
Ga0311301_1001795114	F002897	GAG	MPRRTIRLTGDVDQQLQSTAKTRGYANASAFLRAAINHELRGREDTIIGAEERLATSMDQMRREIFRLGRAQQALFAFVDSLAKILLTCVPEPGGEAMEAAVTRARGRHARLLKSAGQAMSGDSHLAMQELVNDGEG
Ga0311301_100179517	F009276	GGAG	MGVVIIPFDYEQLPEAEQETIVPICIASIDRHGNPIATVWFEKGVAPVQDQLRGLARIKLGDVQRVSELAEITVHKLWERHGENAGIWPWRRVLVRAMWEARDLAAGNSPWRIKHTVSLAMDSLERDLYNNGIADPRRYEEIYHQQLLLDLVERRIAEDHRPEIREVFKMLRQGYNWDEIGQRLGNPSPEALKKRFWRWMHHNFPTKPQ