NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10002760

Scaffold Ga0311301_10002760


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10002760 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65896
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008196Metagenome / Metatranscriptome337Y
F024747Metagenome / Metatranscriptome204Y
F025722Metagenome / Metatranscriptome200Y
F029881Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1000276023F008196AGGAGMRNLVLVVLSLVVSGSLAMSQSKVDTKWHCLKATAEHKLDVGDAPDHSLWIGQGSCEATGSSGDLKEKSGSFTEFHDAWKTSFNFHGYYNATTDDGDKVHYTYEGSASTEATKPPSNKWKIVGGTGKNKGIKGSGTCAGKGNADGSYDWECTGTYSVGMAKMDKMEKMDKMK
Ga0311301_1000276025F029881GAGGMPILLMALLALLVFGVIGILLTAAVVLENSKRARVARSNAAHPVTPGAVPTLNPKLR
Ga0311301_1000276056F025722GGAGGMLRPVTSGLQPFRFVSLAADDHRRLGALIGQQSSQNESELAWIEKLRAASAQQREPRRWRFKVAELVGMLMIGLATAAYLLHLALLK
Ga0311301_1000276057F024747N/AMPYFPPPQALRRAPRTSFGETTPAVLRCQDGRRIRGKLQVISLTGGLLYLSRPVDKGAQIKLMFLTRSGSVLGAAEMLSCDTWGLQPFKFVRLYDDDECRLQAAIQSSLDQNRHDHGQIERYRYW
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