Scaffold Ga0311301_10001966

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10001966
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78323
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (76.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003396	Metagenome / Metatranscriptome	489	Y
F004841	Metagenome / Metatranscriptome	421	Y
F033673	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_1000196615	F033673	AGGAG	MELFLNLCWLSLLAPACLLWRQRNSSTRPDGRAKSPTASPLVFLCVLGCAFVLLFPVISASDDLHAMRAEMEESSPGKRGVCQAAVEKASVWHSPWQNLPAVVATKASLGLIGESWQELFTVPLSVPVAPSTLRASRAPPGSHLG
Ga0311301_100019666	F004841	GAG	VKKVQKPRKSPRAPRIRIPNRERALFFIDGTPFVGVLQRLSLTGGSAILSRGPIRRGTIGDIAIRTDFGKVSAHIQFLQTGADGVPLAQAFCFMAMEDTSTKRLAAAARKMEKEGYSDAPRTKPSPLSTPASQALGQLLHSVRRLAATLVANRASAKR
Ga0311301_100019668	F003396	GGA	MPRKRKKKVFSAAKIVREMARERVGSPKPSQLVVAKKTKAEKHKPTLGKLLTDE